MPI-MG


References


Related tools:

PRIDE

Primer Design for DNA-arrays/chips (GenomePRIDE 1.0)



GenomePRIDE is primer design program that designs PCR primers or long oligos on an annotated sequence.
So far, GenomePRIDE was used for the design of DNA arrays/chips containing all ORFs of the following organisms:

  • Bacillus subtilis (4100, full ORF primer pairs, >>97% success)
  • Schizosaccharomyces pombe (~5000, ORF-specific primer pairs, >99% success)
  • Drosophila melanogaster (Heidelberg FlyArray, 21000, ORF-specific primer pairs, >99% success)
  • Candida albicans
    etc.

    The program is tightly integrated into the Staden package (GAP4).

    FEATURES (preliminary online manual)

  • high record of success

  • computation of PCR primers and/or oligos

  • fast computation

  • defined fragment length

  • homologies are analyzed

  • visualization (based on the Staden package)

  • design of primers in a specific frame
    Availability

    • Stefan Haas
    Last modified: Jun 2006