What is TMPDB?This database was used as the test data set of the paper describing TSEG (Prediction Tool for Transmembrane SEGments in proteins).
What is TMPDB?
ID DIVB_BACSU.
OR PROKARYOTE,BACILLUS SUBTILIS.
NO 5;
AC P16655 SWISSPROT;
DE DIVISION INITIATION PROTEIN(CELL DIVISION AND SPORULATION PROTEIN).
DT 13-DEC-1994
RA HARRY E.J.,STEWART B.J.,WAKE R.G.;
RL MOLECULAR MICROBIOLOGY 7(4):611-621(1993).
NS 1 SEGMENT;
SS ALPHA;
TP N-OUT; C-IN;
FT TRANSMEM 32 53
SQ SEQUENCE 263 AA;
MNPGQDREKI VNIEERIPKI KEQRKQKANR RLISFIMLFF IMVLIIVYLQ TPISKVSTIS
VTGNENVSKK EIIDLSDINS GDTEFWSLDK QKTEKKIQQN KLVKKAEISK SLPNKINIAI
EEYKAIAYLE KDDVYYEVLE NGSVLPNEVT PDDAGPILVN WTNAKKRSQM AKQLDALSNS
LKQSISEIYY TPVKMDENRI KLYMNDGYVV TASIKTFADR MKTYPSIISQ LSSNKKGIIH
LEVATYFEEF GKNDKAAKKE DEN
//
ID VRXB_LAMBD.
OR PROKARYOTE,BACTERIOPHAGE LAMBDA.
NO 44;
AC P03759 SWISSPROT;
DE REXB PROTEIN.
DT 13-DEC-1994
RA PARMA D.H.,SNYDER M.,SOBOLEVSKI S.,NAWROZ M.,BRODY E.,GOLD L.;
RL GENES & DEVELOPMENT 6:497-510(1992).
NS 4 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 8 26
FT TRANSMEM 47 65
FT TRANSMEM 86 104
FT TRANSMEM 116 134
SQ SEQUENCE 144 AA;
MRNRIMPGVY IVIIPYVIVS ICYLLFRHYI PGVSFSAHRD GLGATLSSYA GTMIAILIAA
LTFLIGSRTR RLAKIREYGY MTSVVIVYAL SFVELGALFF CGLLLLSSIS GYMIPTIAIG
IASASFIHIC ILVFQLYNLT REQE
//
ID FTSL_ECOLI.
OR PROKARYOTE,ESCHERICHIA COLI.
NO 30;
AC P22187 SWISSPROT;
DE CELL DIVISION PROTEIN FTSL.
DT 13-DEC-1994
RA GUZMAN L.-M.,BARONDESS J.J.,BECKWITH J.;
RL JOURNAL OF BACTERIOLOGY 174:7716-7728(1992).
NS 1 SEGMENT;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 38 57
SQ SEQUENCE 121 AA;
MISRVTEALS KVKGSMGSHE RHALPGVIGD DLLRFGKLPL CLFICIILTA VTVVTTAHHT
RLLTAQREQL VLERDALDIE WRNLILEENA LGDHSRVERI ATEKLQMQHV DPSQENIVVQ
K
//
ID EXBD_ECOLI.
OR PROKARYOTE,ESCHERICHIA COLI.
NO 34;
AC P18784 SWISSPROT;
DE BIOPOLYMER TRANSPORT EXBD PROTEIN.
DT 13-DEC-1994
RA KAMPFENKEL K.,BRAUN V.;
RL JOURNAL OF BACTERIOLOGY 174:5485-5487(1992).
NO 34;
NS 1 SEGMENT;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 23 43
SQ SEQUENCE 141 AA;
MAMHLNENLD DNGEMHDINV TPFIDVMLVL LIIFMVAAPL ATVDVKVNLP ASTSTPQPRP
EKPVYLSVKA DNSMFIGNDP VTDETMITAL NALTEGKKDT TIFFRADKTV DYETLMKVMD
TLHQAGYLKI GLVGEETAKA K
//
ID CYOA_ECOLI.
OR PROKARYOTE,ESCHERICHIA COLI.
NO 88;
AC P18400 SWISSPROT;
DE CYTOCHROME O UBIQUINOL OXIDASE SUBUNIT II PRECURSOR (EC 1.10.3.-).
DE SIGNAL SEQUENCE (1-24) REMOVED
DT 13-DEC-1994
RA CHEPURI V.,LEMIEUK L.,HILL J.,ALBEN J.O.,GENNIS R.B.;
RL BIOCHIMICA ET BIOPHYSICA ACTA 1018:124-127(1990).
NS 2 SEGMENTS;
SS ALPHA;
TP N-OUT; C-OUT;
FT TRANSMEM 27 45
FT TRANSMEM 69 87
SQ SEQUENCE 291 AA;
CNSALL DPKGQIGLEQ RSLILTAFGL MLIVVIPAIL
MAVGFAWKYR ASNKDAKYSP NWSHSNKVEA VVWTVPILII IFLAVLTWKT THALEPSKPL
AHDEKPITIE VVSMDWKWFF IYPEQGIATV NEIAFPANTP VYFKVTSNSV MNSFFIPRLG
SQIYAMAGMQ TRLHLIANEP GTYDGISASY SGPGFSGMKF KAIATPDRAA FDQWVAKAKQ
SPNTMSDMAA FEKLAAPSEY NQVEYFSNVK PDLFADVINK FMAHGKSMDM TQPEGEHSAH
EGMEGMDMSH AESAH
//
ID EXBB_ECOLI.
OR PROKARYOTE,ESCHERICHIA COLI.
NO 8;
AC P18783 SWISSPROT;
DE BIOPOLYMER TRANSPORT EXBB PROTEIN.
DT 13-DEC-1994
RA KAMPFENKEL K.,BRAUN V.;
RL J.BIOL.CHEM. 268:6050-6057(1993).
NS 3 SEGMENTS;
SS ALPHA;
TP N-OUT; C-IN;
FT TRANSMEM 16 39
FT TRANSMEM 128 155
FT TRANSMEM 162 194
SQ SEQUENCE 244 AA;
MGNNLMQTDL SVWGMYQHAD IVVKCVMIGL ILASVVTWAI FFSKSVEFFN LKRRLKREQQ
LLAEARSLNQ ANDIAADFGS KSLSLHLLNE AQNELELSEG SDDNEGIKER TSFRLERRVA
AVGRQMGRGN GYLATIGAIS PFVGLFGTVW GIMNSFIGIA QTQTTNLAVV APGIAEALLA
TAIGLVAAIP AVVIYNVFAR QIGGFKAMLG DVAAQVLLLQ SRDLDLEASA AAHPVAVAQK
LRAG
//
ID CYOD_ECOLI.
OR PROKARYOTE,ESCHERICHIA COLI.
NO 87;
AC P18403 SWISSPROT;
DE CYTOCHROME O UBIQUINOL OXIDASE OPERON PROTEIN CYOD.
DT 13-DEC-1994
RA CHEPURI V.,GENNIS R.B.;
RL J.BIOL.CHEM. 265:12978-12986(1990).
NS 3 SEGMENTS;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 18 36
FT TRANSMEM 46 64
FT TRANSMEM 81 99
SQ SEQUENCE 109 AA;
MSHSTDHSGA SHGSVKTYMT GFILSIILTV IPFWMVMTGA ASPAVILGTI LAMAVVQVLV
HLVCFLHMNT KSDEGWNMTA FVFTVLIIAI LVVGSIWIMW NLNYNMMMH
//
ID IMMA_CITFR.
OR PROKARYOTE,CITROBACTER FREUND II.
NO 114;
AC P05701 SWISSPROT;
DE IMMUNITY PROTEIN FOR COLICIN A.
DT 13-DEC-1994
RA GELI V.,BATY D.,PATTUS F.,LAZDUNSKI C.;
RL MOLECULAR MICROBIOLOGY 3(5):679-687(1989).
NS 4 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 14 37
FT TRANSMEM 69 89
FT TRANSMEM 106 123
FT TRANSMEM 143 165
SQ SEQUENCE 178 AA;
MMNEHSIDTD NRKANNALYL FIIIGLIPLL CIFVVYYKTP DALLLRKIAT STENLPSITS
SYNPLMTKVM DIYCKTAPFL ALILYILTFK IRKLINNTDR NTVLRSCLLS PLVYAAIVYL
FCFRNFELTT AGRPVRLMAT NDATLLLFYI GLYSIIFFTT YITLFTPVTA FKLLKKRQ
//
ID DHG_ECOLI.
OR PROKARYOTE,ESCHERICHIA COLI.
NO 18;
AC P15877 SWISSPROT;
DE GLUCOSE DEHYDROGENASE(PYRROLOQUINOLINE-QUINONE)(EC 1.1.99.17).
DT 13-DEC-1994
RA YAMADA M.,SUMI K.,MATSUSHITA K.,ADACHI O.YAMADA Y.;
RL J.BIOL.CHEM. 268:12812-12817(1993).
NS 5 SEGMENTS;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 11 37
FT TRANSMEM 41 58
FT TRANSMEM 63 81
FT TRANSMEM 96 110
FT TRANSMEM 119 140
SQ SEQUENCE 796 AA;
MAINNTGSRR LLVTLTALFA ALCGLYLLIG GGWLVAIGGS WYYPIAGLVM LGVAWMLWLS
KRAALWLYAA LLLGTMIWGV WEVGFDFWAL TPRSDILVFF GIWLILPFVW RRLVIPASGA
VAALVVALLI SGGILTWAGF NDPQEINGHL KRRCHTAEAI SPVADQDWPA YGRNQEGQRF
SPLKQINADN VHKLKEAWVF RTGDVKQPND PGEITNEVTP IKVGDTLYLC TAHQRLFALD
AASGKEKWHY DPELKTNESF QHVTCRGVSY HEAKAETASP EVMADCPRRI ILPVNDGRLI
AINAENGKLC ETFANKGVLN LQSNMPDTKP GLYEPTSPPI ITDKTIVMAG SVTDNFSTRE
TSGVIRGFDV NTGELLWAFD PGAKDPNAIP SDEHTFTFNS PNSWAPAAYD AKLDLVYLPM
GVTTPDIWGG NRTPEQERYA SSILALNATT GKLAWSYQTV HHDLWDMDLP AQPTLADITV
NGQKVPVIYA PAKTGNIFVL DRRNGELVVP APEKPVPQGA AKGDYVTPTQ PFSELSFRPT
KDLSGADMWG ATMFDQLVCR VMFHQMRYEG IFTPPSEQGT LVFPGNLGMF EWGGISVDPN
REVAIANPMA LPFVSKLIPR GPGNPMEQPK DAKGTGTESG IQPQYGVPYG VTLNPFLSPF
GLPCKQPAWG YISALDLKTN EVVWKKRIGT PQDSMPFPMP VPVPFNMGMP MLGGPISTAG
NVLFIAATAD NYLRAYNMSN GEKLWQGRLP AGGQATPMTY EVNGKQYVVI SAGGHGSFGT
KMGDYIVAYA LPDDVK
//
ID CYOC_ECOLI.
OR PROKARYOTE,ESCHERICHIA COLI.
NO 87;88;
AC P18402 SWISSPROT;
DE CYTOCHROME O UBIQUINOL OXIDASE SUBUNIT III(EC 1.10.3.-).
DT 13-DEC-1994
RA CHEPURI V.,GENNIS R.B.;
RL J.BIOL.CHEM. 265:12978-12986(1990).
RA CHEPURI V.,LEMIEUX L.,HILL J.,ALBEN J.O.,GENNIS R.B.;
RL BIOCHIMICA ET BIOPHYSICA ACTA 1018:124-127(1990).
NS 5 SEGMENTS;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 32 50
FT TRANSMEM 67 85
FT TRANSMEM 102 120
FT TRANSMEM 143 161
FT TRANSMEM 185 203
SQ SEQUENCE 204 AA;
MATDTLTHAT AHAHEHGHHD AGGTKIFGFW IYLMSDCILF SILFATYAVL VNGTAGGPTG
KDIFELPFVL VETFLLLFSS ITYGMAAIAM YKNNKSQVIS WLALTWLFGA GFIGMEIYEF
HHLIVNGMGP DRSGFLSAFF ALVGTHGLHV TSGLIWMAVL MVQIARRGLT STNRTRIMCL
SLFWHFLDVV WICVFTVVYL MGAM
//
ID CYOE_ECOLI.
OR PROKARYOTE,ESCHERICHIA COLI.
NO 87;
AC P18404 SWISSPROT;
DE CYTOCHROME O UBIQUINOL OXIDASE OPERON PROTEIN CYOE.
DT 13-DEC-1994
RA CHEPURI V.,GENNIS R.B.;
RL J.BIOL.CHEM. 265:12978-12986(1990).
NS 7 SEGMENTS;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 10 28
FT TRANSMEM 38 56
FT TRANSMEM 79 97
FT TRANSMEM 108 126
FT TRANSMEM 198 216
FT TRANSMEM 229 247
FT TRANSMEM 269 287
SQ SEQUENCE 296 AA;
MMFKQYLQVT KPGIIFGNLI SVIGGFLLAS KG LASKN CVHRDLAARN VLICEGKLVK
ICDFGLARDI MRDSNYISKG STYLPLKWMA PESIFNSLYT TLSDVWSFGI LLWEIFTLGG
TPYPELPMND QFYNAIKRGY RMAQPAHASD EIYEIMQKCW EEKFETRPPF SQLVLLLERL
LGEGYKKKYQ QVDEEFLRSD HPAILRSQAR FPGIHSLRSP LDTSSVLYTA VQPNESDNDY
IIPLPDPKPD VADEGLPEGS PSLASSTLNE VNTSSTISCD SPLELQEEPQ QAEPEAQLEQ
PQDSGCPGPL AEAEDSFL
//
ID URA2_XENLA.
OR EUKARYOTE,XENOPUS LAEVIS.
NO N1;
AC A27715 PIR;
DE PEPTIDYLGLYCINE MONOOXYGENASE(EC 1.14.17.3)II PRECURSOR,
DE ALPHA-AMIDATING ENZYME II; PEPTIDYLGLYCINE 2-HYDROXYLASE II.
DE SIGNAL SEQUENCE (1-24) REMOVED
DT 17-FEB-1995
RA OHSUYE K.,KITANO K.,WADA Y.,FUCHIMURA K.,TANAKA S.,MIZUNO K.
RA MATSUO H.;
RL BIOCHEM. BIOPHYS. RES. COMMUN. 150:1275-1281(1988).
NS 1 SEGMENT;
SS ALPHA;
TP N-OUT; C-IN;
FT TRANSMEM 740 763
SQ SEQUENCE 851 AA;
RSPLSV FKRYEESTRS LSNDCLGTTR PVMSPGSSDY
TLDIRMPGVT PTESDTYLCK SYRLPVDDEA YVVDYRPHAN MDTAHHMLLF GCNVPSSTDD
YWDCSAGTCN DKSSIMYAWA KNAPPTKLPE GVGFQVGGKS GSRYFVLQVH YGDVKAFQDK
HKDCTGVTVR ITPEKQPLIA GIYLSMSLNT VVPPGQEVVN SDIACLYNRP TIHPFAYRVH
THQLGQVVSG FRVRHGKWTL IGRQSPQLPQ AFYPVEHPLE ISPGDIIATR CLFTGKGRMS
ATYIGGTAKD EMCNLYIMYY MDAAHATSYM TCVQTGNPKL FENIPEIANV PIPVSPDMMM
MMMMGHGHHH TEAEAETNTA LQQPKREEEE VLNQDVHLEE DTDWPGVNLK VGQVSGLALD
PKNNLVIFHR GDHVWDENSF DRNFVYQQRG IGPIQESTIL VVDPNTSKVL KSTGQNLFFL
PHGLTIDRDG NYWVTDVALH QVFKVGAEKE TPLLVLGRAF QPGSDRKHFC QPTDVAVDPI
TGNFFVADGY CNSRIMQFSP NGMFIMQWGE ETSSNLPRPG QFRIPHSLTM ISDQGQLCVA
DRENGRIQCF HAKTGEFVKQ IKHQEFGREV FAVSYAPGGV LYAVNGKPYY GDSTPVQGFM
LNFSNGDILD TFIPARKNFE MPHDIAAGDD GTVYVGDAHA NAVWKFSPSK AEHRSVKKAG
IEVEEITETE IFETHMRSRP KTNESVGQQT QEKPSVVQES SAGVSFVLII TLLIIPVVVL
IAIAIFIRWR KVRMYGGDIG HKSESSSGGI LGKLRGKGSG GLNLGTFFAT HKGYSRKGFD
RLSTEGSDQE KDDDDDGSDS EEEYSAPPIP PVSSS
//
ID EXAS_IAV.
OR EUKARYOTE,INFLUENZA A VIRUS STRAIN A/PR/8/34.
NO N4;
AC A00880 PIR;
DE EXO-ALPHA-SIALIDASE(EC 3.2.1.18).
DT 17-FEB-1995
RA FIELDS S.,WINTER G.,BROWNLEE G.G.;
RL NATURE 290:213-217(1981).
NS 1 SEGMENT;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 7 23
SQ SEQUENCE 454 AA;
MNPNQKIITI GSICLVVGLI SLILQIGNII SIWISHSIQT GSQNHTGICN QNIITYKNST
WVKDTTSVIL TGNSSLCPIR GWAIYSKDNS IRIGSKGDVF VIREPFISCS HLECRTFFLT
QGALLNDRHS NGTVKDRSPY RALMSCPVGE APSPYNSRFE SVAWSASACH DGMGWLTIGI
SGPDNGAVAV LKYNGIITET IKSWRKKILR TQESECACVN GSCFTIMTDG PSDGLASYKI
FKIEKGKVTK SIELNAPNSH YEECSCYPDT GKVMCVCRDN WHGSNRPWVS FDQNLDYQIG
YICSGVFGDN PRPKDGTGSC GPVYVDGANG VKGFSYRYGN GVWIGRTKSH SSRHGFEMIW
DPNGWTETDS KFSVRQDVVA MTDWSGYSGS FVQHPELTGL DCIRPCFWVE LIRGRPKEKT
IWTSASSISF CGVNSDTVDW SWPDGAELPF TIDK
//
ID BCS1_YEAST
OR SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
ME MITOCHONDRIAL INNER MEMBRANE;
NO 4;
AC P32839;
DE BCS1 PROTEIN.
DT 17-SEP-1996.
RX MEDLINE; 96174808.
RA FOELSCH, H., GUIARD, B., NEUPERT, W., STUART, R.A.;
RL EMBO J. 15:479-487(1996).
TE POTEINASE
NS 1 SEGMENT;
SS ALPHA;
TP N-OUT; C-IN;
FT TRANSMEM 45 68
SQ SEQUENCE 456 AA; 51215 MW; E1749CF6 CRC32;
MSDKPIDIQY DKQATPNLSG VITPPTNETG NDSVREKLSK LVGDAMSNNP YFAAGGGLMI
LGTGLAVARS GIIKASRVLY RQMIVDLEIQ SKDKSYAWFL TWMAKHPQRV SRHLSVRTFY
IQHDNGSVST KFSLVPGPGN HWIRYKGAFI LIKRERSAKM IDIANGSPFE TVTLTTLYRD
KHLFDDILNE AKDIALKTTE GKTVIYTSFG PEWRKFGQPK AKRMLPSVIL DSGIKEGILD
DVYDFMKNGK WYSDRGIPYR RGYLLYSPPG SGKTSFIQAL AGELDYNICI LNLSENNLTD
DRLNHLMNNM PERSILLLED IDAAFNKRSQ TGEQGFHSSV TFSGLLNAQD SVTSSEETIT
FMTTNHPEKL DAAIMRPGRI DYKVFVGNAT PYQVEKMFMK FYPGETDICK KFVNSVKELD
ITVSTAQLQG LFVMNKDAPH DALKMVSSLR NANHIF
//
ID CP5B_CANTR
OR CANDIDA TROPICALIS (YEAST).
ME ER;
NO 2;
AC P30607 SWISSPROT;
DE CYTOCHROME P450 LIIA2 (ALKANE-INDUCIBLE) (EC 1.14.14.1) (P450-ALK2).
DT 17-SEPT-1996
RX MEDLINE; 93387299.
RA SANGLARD D., SENGSTSAG C., SEGHEZZI W.;
RL EUR. J. BIOCHEM. 216:477-485(1993).
TE FUSION PROTEIN, INVERTASE, HITDINOL DHYDROGENASE;
NS 1 SEGMENT;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 14 33
SQ SEQUENCE 522 AA; 60151 MW; 477AB1F5 CRC32;
MSIQDIVETY STKWYVVVLV ALIVYKVFDF FYARYLMYKL GAKPFLQSQT DGYLGFRVPF
ELMGKKSEGT LIDFTYQRTL ELDNPDIPTF TFPIFSVLII STLEPDNIKA ILATQFNDFS
LGTRHSHFAP LLGDGIFTLD GAGWKHSRSM LRPQFAREQV SHVKLLEPHM QVFFKHIRKH
HGQTFDIQEL FFRLTVDSAT EFLFGESVES LRDESIGMLN DALDFDGKAG FADAFNYSQN
YLASRALMQQ MYWILNGKKF KECNAKVHKF ADYYVEKALE LTPDQLEKQD GYVFLYELVK
QTRDRQVLRD QLLNILVAGR DTTAGLLSFV FFELARTPRV ANKLREEIED KFGLGQDARV
EEISFESLKS CEYLKAVLNE CLRLYPSVPQ NFRVATRNTT LPRGGGKDGL SPVLVRKGQT
VMYSVYAAHR NKQIYGEDAL EFRPERWFEP ETKKLGWAFL PFNGGPRICL GQQFALTEAS
YVTVRLLQEF SHLTMDPNTE YSPKKMSHLT MSLFDGANIQ MY
//
ID DSBB_ECOLI
OR ESCHERICHIA COLI.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNER MEMBRANE;
NO 5;
AC P30018 SWISSPROT;
DE DISULFIDE BOND FORMATION PROTEIN B.
DT 17-SEP-1996
RX MEDLINE; 95045404.
RA JANDER G., MARTIN N.L., BECKWITH J.;
RL EMBO J. 13:5121-5127(1994).
TE GENE FUSION, ALKALINE PHOSPHATASE;
NS 4 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 15 31
FT TRANSMEM 50 65
FT TRANSMEM 72 89
FT TRANSMEM 145 162
SQ SEQUENCE 176 AA; 20142 MW; A3DF7EDC CRC32;
MLRFLNQCSQ GRGAWLLMAF TALALELTAL WFQHVMLLKP CVLCIYERCA LFGVLGAALI
GAIAPKTPLR YVAMVIWLYS AFRGVQLTYE HTMLQLYPSP FATCDFMVRF PEWLPLDKWV
PQVFVASGDC AERQWDFLGL EMPQWLLGIF IAYLIVAVLV VISQPFKAKK RDLFGR
//
ID FIXL_RHIME
OR RHIZOBIUM MELILOTI.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNER MEMBRANE;
NO 6;
AC P10955;
DE SENSOR PROTEIN FIXL (EC 2.7.3.-).
DT 17-SEP-1996
RX MEDLINE; 93163039.
RA LOIS A.F., DITTA G.S., HELINSKI D.R.;
RL J. BACTERIOL. 175:1103-1109(1993).
TE GENE FUSION, ALKALINE PHOSPHATASE;
NS 4 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 21 41
FT TRANSMEM 46 67
FT TRANSMEM 71 86
FT TRANSMEM 97 120
SQ SEQUENCE 505 AA; 55073 MW; 2DF81333 CRC32;
MLSKSGIERT QWGRRVVRWR GDGVAAYIVA AIVTSSVLAI RMIRAEPIGE GLLLFSFIPA
ILVVALIGGR NPILFAAGLS LVAAVSHQQI SSADGPSVVE LLVFGSAVLL IVALGEVLEA
ARRAIDRTED VVRARDAHLR SILDTVPDAT VVSATDGTIV SFNAAAVRQF GYAEEEVIGQ
NLRILMPEPY RHEHDGYLQR YMATGEKRII GIDRVVSGQR KDGSTFPMKL AVGEMRSGGE
RFFTGFIRDL TEREESAARL EQIQAELARL ARLNEMGEMA STLAHELNQP LSAIANYSHG
CTRLLRDMDD AVATRIREAL EEVASQSLRA GQIIKHLREF VTKGETEKAP EDIRKLVEES
AALALVGSRE QGVRTVFEYL PGAEMVLVDR IQVQQVLINL MRNAIEAMRH VDRRELTIRT
MPADPGEVAV VVEDTGGGIP EEVAGQLFKP FVTTKASGMG IGLSISKRIV EAHGGEMTVS
KNEAGGATFR FTLPAYLDER IVAND
//
ID IM17_YEAST
OR SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
ME MITOCHONDRIAL INNER MEMBRANE;
NO 7;
AC P39515 SWISSPROT;
DE MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM17
DT 18-SEP-1996
RX MEDLINE; 94326924.
RA KUEBRICH M., KEIL P., RASSOW J., DEKKER P.J.T., BLOM J., MEIJER M.,
RA PFANNER N.;
RL FEBS LETT. 349:222-228(1994).
TE PROTEASE, GENE FUSION, C-MYC;
NS 4 SEGMENTS;
SS ALPHA;
TP N-OUT; C-OUT;
FT TRANSMEM 12 32
FT TRANSMEM 59 79
FT TRANSMEM 88 108
FT TRANSMEM 113 133
SQ SEQUENCE 158 AA; 16584 MW; 8BDDCBFA CRC32;
MSADHSRDPC PIVILNDFGG AFAMGAIGGV VWHGIKGFRN SPLGERGSGA MSAIKARAPV
LGGNFGVWGG LFSTFDCAVK AVRKREDPWN AIIAGFFTGG ALAVRGGWRH TRNSSITCAC
LLGVIEGVGL MFQRYAAWQA KPMAPPLPEA PSSQPLQA
//
ID IM23_YEAST
OR SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
ME MITOCHONDORIAL INNER MEMBRANE;
NO 8;
AC P32897 SWISSPROT;
DE MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23
DT 18-SEP-1996
RX MEDLINE; 94326924.
RA RA KUEBRICH M., KEIL P., RASSOW J., DEKKER P.J.T., BLOM J., MEIJER M.,
RA PFANNER N.;
RL FEBS LETT. 349:222-228(1994).
TE PROTEASE, GENE FUSION, C-MYC;
NS 4 SEGMENTS;
SS ALPHA;
TP N-OUT; C-OUT;
FT TRANSMEM 97 130
FT TRANSMEM 145 166
FT TRANSMEM 175 189
FT TRANSMEM 197 215
SQ SEQUENCE 222 AA; 23243 MW; 320C2078 CRC32;
MSWLFGDKTP TDDANAAVGG QDTTKPKELS LKQSLGFEPN INNIISGPGG MHVDTARLHP
LAGLDKGVEY LDLEEEQLSS LEGSQGLIPS RGWTDDLCYG TGAVYLLGLG IGGFSGMMQG
LQNIPPNSPG KLQLNTVLNH ITKRGPFLGN NAGILALSYN IINSTIDALR GKHDTAGSIG
AGALTGALFK SSKGLKPMGY SSAMVAAACA VWCSVKKRLL EK
//
ID HISQ_SALTY
OR SALMONELLA TYPHIMURIUM.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNNER MEMBRANE;
NO 9;
AC P02913 SWISSPROT;
DE HISTIDINE TRANSPORT SYSTEM PERMEASE PROTEIN HISQ.
DT 18-SEP-1996
RX MEDLINE; 92129308.
RA KERPPOLA R.E., AMES G.F.-L.;
RL J. BIOL. CHEM. 267:2329-2336(1992).
TE TRYPSIN, PROTEINASE K, ANTIBODY, GENE FUSION, ALKALINE PHOSPHATASE;
NS 5 SEGMENTS;
SS ALPHA;
TP N-OUT; C-IN;
FT TRANSMEM 13 33
FT TRANSMEM 59 79
FT TRANSMEM 88 108
FT TRANSMEM 153 173
FT TRANSMEM 195 215
SQ SEQUENCE 228 AA; 24620 MW; 0A61FA4D CRC32;
MLYGFSGVIL QGAIVTLELA LSSVVLAVLI GLVGAGAKLS QNRVTGLIFE GYTTLIRGVP
DLVLMLLIFY GLQIALNVVT DSLGIDQIDI DPMVAGIITL GFIYGAYFTE TFRGAFMAVP
KGHIEAATAF GFTHGQTFRR IMFPAMMRYA LPGIGNNWQV ILKATALVSL LGLEDVVKAT
QLAGKSTWEP FYFAVVCGLI YLVFTTVSNG VLLLLERRYS VGVKRADL
//
ID KDGL_ECOLI
OR ESCHERICHIA COLI.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNNER MEMBRANE;
NO 10;
AC P00556 SWISSPROT;
DE DIACYLGLYCEROL KINASE (EC 2.7.1.107) (DAGK) (DIGLYCERIDE KINASE)
DE (DGK).
DT 18-SEP-1996
RX MEDLINE; 94350829.
RA SMITH R.L., O'TOOLE J.F., MAGUIRE M.E., SANDERS C.R. II;
RL J. BACTERIOL. 176:5459-5465(1994).
TE GENE FUSION, BETA-LACTAMASE, BETA-GALACTOSIDASE;
NS 3 SEGMENTS;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 33 48
FT TRANSMEM 52 68
FT TRANSMEM 96 118
SQ SEQUENCE 121 AA; 13113 MW; 010A5FC6 CRC32;
ANNTTGFTRI IKAAGYSWKG LRAAWINEAA FRQEGVAVLL AVVIACWLDV DAITRVLLIS
SVMLVMIVEI LNSAIEAVVD RIGSEYHELS GRAKDMGSAA VLIAIIVAVI TWCILLWSHF
G
//
ID MPCP_BOVIN
OR BOS TAURUS (BOVINE).
ME MITOCHONDRIAL INNER MEMBRANE;
NO 11;
AC P12234 SWISSPROT;
DE MITOCHONDRIAL PHOSPHATE CARRIER PROTEIN PRECURSOR.
DE TRANSIT SEQUENCE (1-49) REMOVED
DT 18-SEP-1996
RX MEDLINE; 91242395.
RA CAPOBIANCO L., BRANDOLIN G., PALMIERI F.;
RL BIOCHEMISTRY 30:4963-4969(1991).
TE ANTIBODY, CARBOXYPEPTIDASE A, ARGININE-SPECIFIC ENDOPROTEASE;
NS 6 SEGMENTS;
SS ALPHA;
TP N-OUT; C-OUT;
FT TRANSMEM 15 37
FT TRANSMEM 73 92
FT TRANSMEM 113 134
FT TRANSMEM 170 189
FT TRANSMEM 213 235
FT TRANSMEM 266 284
SQ SEQUENCE 313 AA;
AVEEQYSCDY GSGRFFILCG LGGIISCGTT HTALVPLDLV KCRMQVDPQK YKSIFNGFSV
TLKEDGFRGL AKGWAPTFIG YSLQGLCKFG FYEVFKVLYS NMLGEENAYL WRTSLYLAAS
ASAEFFADIA LAPMEAAKVR IQTQPGYANT LRDAAPKMYK EEGLKAFYKG VAPLWMRQIP
YTMMKFACFE RTVEALYKFV VPKPRSECSK PEQLVVTFVA GYIAGVFCAI VSHPADSVVS
VLNKEKGSSA SEVLKRLGFR GVWKGLFARI IMIGTLTALQ WFIYDSVKVY FRLPRPPPPE
MPESLKKKLG YTQ
//
ID MYPR_HUMAN
OR HOMO SAPIENS (HUMAN), RATTUS NORVEGICUS (RAT), AND MUS MUSCULUS
OS (MOUSE).
ME EUKARYOTIC PLASMA MEMBRANE, MYELIN SHEATH;
NO 13;
AC P06905 P04400 SWISSPROT;
DE MYELIN PROTEOLIPID PROTEIN (PLP) (LIPOPHILIN) (CONTAINS: MYELIN
DE PROTEIN DM-20).
DT 18-SEP-1996
RX MEDLINE; 91269299.
RA POPOT J.-L., PHAM-DINH D., DAUTIGNY A.;
RL J. MEMBR. BIOL. 120:233-246(1991).
TE DISCUSS WITH EXPERIMENTAL DATA, RADIOACTIVE LABELING, X-RAY DIFFRACTION,
TE TRYPSIN, DISULFIDE BRIDGES, IMMUNOLABELING;
NS 4 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 10 35
FT TRANSMEM 59 87
FT TRANSMEM 151 177
FT TRANSMEM 238 267
SQ SEQUENCE 276 AA; 29946 MW; 0CCC8371 CRC32;
GLLECCARCL VGAPFASLVA TGLCFFGVAL FCGCGHEALT GTEKLIETYF SKNYQDYEYL
INVIHAFQYV IYGTASFFFL YGALLLAEGF YTTGAVRQIF GDYKTTICGK GLSATVTGGQ
KGRGSRGQHQ AHSLERVCHC LGKWLGHPDK FVGITYALTV VWLLVFACSA VPVYIYFNTW
TTCQSIAFPS KTSASIGSLC ADARMYGVLP WNAFPGKVCG SNLLSICKTA EFQMTFHLFI
AAFVGAAATL VSLLTFMIAA TYNFAVLKLM GRGTKF
//
ID PTMA_ECOLI
OR ESCHERICHIA COLI.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNNER MEMBRANE;
NO 14;
AC P00550 SWISSPROT;
DE PTS SYSTEM, MANNITOL-SPECIFIC IIABC COMPONENT (EIIABC-MTL) (MANNITOL-
DE PERMEASE IIABC COMPONENT) (PHOSPHOTRANSFERASE ENZYME II, ABC
DE COMPONENT) (EC 2.7.1.69) (EII-MTL).
DT 19-SEP-1996
RX MEDLINE; 92052139.
RA SUGIYAMA J.E., MAHMOODIAN S., JACOBSON G.R.;
RL PROC. NATL. ACAD. SCI. U.S.A. 88:9603-9607(1991).
TE GENE FUSION, ALKALINE PHOSPHATASE;
NS 6 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 25 44
FT TRANSMEM 51 69
FT TRANSMEM 135 154
FT TRANSMEM 166 184
FT TRANSMEM 274 291
FT TRANSMEM 314 333
SQ SEQUENCE 637 AA; 67972 MW; 0F5DF5E5 CRC32;
MSSDIKIKVQ SFGRFLSNMV MPNIGAFIAW GIITALFIPT GWLPNETLAK LVGPMITYLL
PLLIGYTGGK LVGGERGGVV GAITTMGVIV GADMPMFLGS MIAGPLGGWC IKHFDRWVDG
KIKSGFEMLV NNFSAGIIGM ILAILAFLGI GPIVEALSKM LAAGVNFMVV HDMLPLASIF
VEPAKILFLN NAINHGIFSP LGIQQSHELG KSIFFLIEAN PGPGMGVLLA YMFFGRGSAK
QSAGGAAIIH FLGGIHEIYF PYVLMNPRLI LAVILGGMTG VFTLTILGGG LVSPASPGSI
LAVLAMTPKG AYFANIAGVC AAMAVSFVVS AILLKTSKVK EEDDIEAATR RMQDMKAESK
GASPLSAGDV TNDLSHVRKI IVACDAGMGS SAMGAGVLRK KIQDAGLSQI SVTNSAINNL
PPDVDLVITH RDLTERAMRQ VPQAQHISLT NFLDSGLYTS LTERLVAAQR HTANEEKVKD
SLKDSFDDSS ANLFKLGAEN IFLGRKAATK EEAIRFAGEQ LVKGGYVEPE YVQAMLDREK
LTPTYLGESI AVPHGTVEAK DRVLKTGVVF CQYPEGVRFG EEEDDIARLV IGIAARNNEH
IQVITSLTNA LDDESVIERL AHTTSVDEVL ELLAGRK
//
ID TOLR_ECOLI
OR ESCHERICHIA COLI.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNER MEMBRANE;
NO 15;
AC P05829 SWISSPROT;
DE TOLR PROTEIN.
DT 20-SEP-1996
RX MEDLINE; 93388543.
RA MULLER M.M., VIANNEY A., LAZZARONI J.-C., WEBSTER R.E., PORTALIER R.;
RL J. BACTERIOL. 175:6059-6061(1993).
TE GENE FUSION, BETA-GALACTOSIDASE, BETA-LACTAMASE, ALKALINE
TE PHOSPHATASE, PROTEINASE
NS 1 SEGMENT;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 24 43
SQ SEQUENCE 142 AA; 15383 MW; 98C05777 CRC32;
MARARGRGRR DLKSEINIVP LLDVLLVLLL IFMATAPIIT QSVEVDLPDA TESQAVSSND
NPPVIVEVSG IGQYTVVVEK DRLERLPPEQ VVAEVSSRFK ANPKTVFLIG GAKDVPYDEI
IKALNLLHSA GVKSVGLMTQ PI
//
ID VNB_INBLE
OR NFLUENZA B VIRUS (STRAIN B/LEE/40).
ME PLASMA MEMBRANE; INFECTED CELL-SURFACE;
NO 17;
AC P06817 SWISSPROT;
DE NB GLYCOPROTEIN.
DT 20-SEP-1996
RX MEDLINE; 87089789.
RA WILLIAM M.A., LAMB R.A.;
RL MOL. CELL. BIOL. 6:4317-4328(1986).
TE PROTEINASE, SITE-DIRECETED MUTAGENESIS OF GLYCOSILATION SITE;
NS 1 SEGMENT;
SS ALPHA;
TP N-OUT; C-IN;
FT TRANSMEM 19 40
SQ SEQUENCE 100 AA; 11024 MW; 20571305 CRC32;
MNNATFNCTN INPITHIRGS IIITICVSLI VILIVFGCIA KIFINKNNCT NNVIRVHKRI
KCPDCEPFCN KRDDISTPRA GVDIPSFILP GLNLSEGTPN
//
ID GEF_ECOLI
OR ESCHERICHIA COLI.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNER MEMBRANE;
NO 18;
AC P22982 SWISSPROT;
DE GEF PROTEIN.
DT 24-SEP-1996
RX MEDLINE; 92048480.
RA POULSEN L.K., REFN A., MOLIN S., ANDERSSON P.;
RL MOL. MICROBIOL. 5:1627-1637(1991).
TE GENE FUSION, ALKALINE PHOSPHATASE;
NS 1 SEGMENT;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 6 24
SQ SEQUENCE 50 AA; 5502 MW; 0C2C03B2 CRC32;
MKQHKAMIVA LIVICITAVV AALVTRKDLC EVHIRTGQTE VAVFTAYESE
//
ID HOXN_ALCEU
OR ALCALIGENES EUTROPHUS.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNER MEMBRANE;
NO 19;
AC A39512 PIR; P23516 SWISSPROT;
DE HIGH-AFFINITY NICKEL TRANSPORT PROTEIN.
DT 24-SEP-1996
RX MEDLINE; 95020606.
RA EITINGER T., FRIEDRICH B.;
RL MOL. MICROBIOL. 12:1025-1032(1994).
TE GENE FUSION, ALKALINE PHOSPHATASE, BETA-GALACTOSIDASE;
NS 7 SEGMENTS;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 20 40
FT TRANSMEM 52 72
FT TRANSMEM 95 115
FT TRANSMEM 129 149
FT TRANSMEM 200 220
FT TRANSMEM 244 264
FT TRANSMEM 270 290
SQ 301 AA;
MFQLLAGVRM NSTGRPRAKI ILLYALLIAF NIGAWLCALA AFRDHPVLLG TALLAYGLGL
RHAVDADHLA AIDNVTRKLM QDGRRPITAG LWFSLGHSSV VVLASVLIAV MATTLQERLD
RFHEVGSVIG TLASALFLFA IAAINLVILR SAYRAFRRVR RGGIYVEEDF DLLFGNRGFL
ARIFRPLFRF ITRSWHMYPL GMLFALGFDT ATEVALLGIS TMEASRGVPI WSILVFPALF
TAGMALIDTI DSILMCGAYA WAYAKPVRKL YYNMTITFVS AIVALIVGGI ETLASWPTSS
C
//
ID MALG_ECOLI
OR ESCHERICHIA COLI.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNER MEMBRANE;
NO 20;
AC P07622 SWISSPROT;
DE MALTOSE TRANSPORT SYSTEM PERMEASE PROTEIN MALG.
DT 24-SEP-1996
RX MEDLINE; 93172958.
RA DASSA E., MUIR S.;
RL MOL. MICROBIOL. 7:29-36(1993).
TE GENE FUSION, ALKALINE PHOSPHATASE;
NS 6 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 19 39
FT TRANSMEM 82 102
FT TRANSMEM 124 144
FT TRANSMEM 151 171
FT TRANSMEM 205 225
FT TRANSMEM 260 280
SQ SEQUENCE 296 AA; 32225 MW; 4E88515B CRC32;
MAMVQPKSQK ARLFITHLLL LLFIAAIMFP LLMVVAISLR QGNFATGSLI PEQISWDHWK
LALGFSVEQA DGRITPPPFP VLLWLWNSVK VAGISAIGIV ALSTTCAYAF ARMRFPGKAT
LLKGMLIFQM FPAVLSLVAL YALFDRLGEY IPFIGLNTHG GVIFAYLGGI ALHVWTIKGY
FETIDSSLEE AAALDGATPW QAFRLVLLPL SVPILAVVFI LSFIAAITEV PVASLLLRDV
NSYTLAVGMQ QYLNPQNYLW GDFAAAAVMS ALPITIVFLL AQRWLVNGLT AGGVKG
//
ID ATP6_ECOLI
OR ESCHERICHIA COLI.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNER MEMBRANE;
NO 21;
AC P00855 SWISSPROT;
DE ATP SYNTHASE A CHAIN (EC 3.6.1.34) (PROTEIN 6).
DT 25-SEP-1996
RX MEDLINE; 90127403.
RA BJORBAEK C., FOERSOM V., MICHELSON, O.;
RL FEBS LETT. 260:31-34(1990).
TE GENE FUSION, ALKALINE PHOSPHATASE, PROTEASE;
NS 8 SEGMENTS;
SS ALPHA;
TP N-OUT; C-OUT;
FT TRANSMEM 36 60
FT TRANSMEM 70 90
FT TRANSMEM 100 120
FT TRANSMEM 123 142
FT TRANSMEM 146 166
FT TRANSMEM 178 201
FT TRANSMEM 205 229
FT TRANSMEM 241 265
SQ SEQUENCE 271 AA; 30303 MW; 4C798071 CRC32;
MASENMTPQD YIGHHLNNLQ LDLRTFSLVD PQNPPATFWT INIDSMFFSV VLGLLFLVLF
RSVAKKATSG VPGKFQTAIE LVIGFVNGSV KDMYHGKSKL IAPLALTIFV WVFLMNLMDL
LPIDLLPYIA EHVLGLPALR VVPSADVNVT LSMALGVFIL ILFYSIKMKG IGGFTKELTL
QPFNHWAFIP VNLILEGVSL LSKPVSLGLR LFGNMYAGEL IFILIAGLLP WWSQWILNVP
WAIFHILIIT LQAFIFMVLT IVYLSMASEE H
//
ID CNG1_BOVIN
OR BOS TAURUS (BOVINE)
ME ROD CELLS IN THE RETINA.
NO 22;
AC Q00194 SWISSPROT;
DE CGMP-GATED CATION CHANNEL PROTEIN (CYCLIC NUCLEOTIDE GATED CHANNEL,
DE PHOTORECEPTOR) (CYCLIC-NUCLEOTIDE-GATED CATION CHANNEL 1) (CNG CHANNEL
DE 1) (CNG-1) (CNG1).
DT 01-FEB-1997
RX PMID: 7543681, MUID: 95365381;
RA HENN, D.K., BAUMANN, A., KAUPP, U.;
RL PROT. NATL. ACAD. SCI. USA 92:7425-7429(1995).
TE GENE FUSION, ALKALINE PHOSPHATASE, BETA-GALACTOSIDASE;
NS 6 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 163 183
FT TRANSMEM 197 215
FT TRANSMEM 240 259
FT TRANSMEM 298 320
FT TRANSMEM 373 392
FT TRANSMEM 477 497
SQ SEQUENCE 690 AA; 79602 MW; B9C8A5A3 CRC32;
MKKVIINTWH SFVNIPNVVG PDVEKEITRM ENGACSSFSG DDDDSASMFE ESETENPHAR
DSFRSNTHGS GQPSQREQYL PGAIALFNVN NSSNKEQEPK EKKKKKKEKK SKPDDKNENK
KDPEKKKKKE KDKDKKKKEE KGKDKKEEEK KEVVVIDPSG NTYYNWLFCI TLPVMYNWTM
IIARACFDEL QSDYLEYWLA FDYLSDVVYL LDMFVRTRTG YLEQGLLVKE ERKLIDKYKS
TFQFKLDVLS VIPTDLLYIK FGWNYPEIRL NRLLRISRMF EFFQRTETRT NYPNIFRISN
LVMYIIIIIH WNACVYFSIS KAIGFGNDTW VYPDVNDPDF GRLARKYVYS LYWSTLTLTT
IGETPPPVRD SEYFFVVADF LIGVLIFATI VGNIGSMISN MNAARAEFQA RIDAIKQYMH
FRNVSKDMEK RVIKWFDYLW TNKKTVDERE VLKYLPDKLR AEIAINVHLD TLKKVRIFAD
CEAGLLVELV LKLQPQVYSP GDYICKKGDI GREMYIIKEG KLAVVADDGI TQFVVLSDGS
YFGEISILNI KGSKAGNRRT ANIKSIGYSD LFCLSKDDLM EALTEYPDAK GMLEEKGKQI
LMKDGLLDIN IANAGSDPKD LEEKVTRMES SVDLLQTRFA RILAEYESMQ QKLKQRLTKV
EKFLKPLIDT EFSAIEGSGT ESGPTDSTQD
//
ID LYSP_ECOLI
OR ESCHERICHIA COLI.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNNER MEMBRANE;
NO 23;
AC P25737 SWISSPROT;
DE LYSINE-SPECIFIC PERMEASE.
DT 01-FEB-1997
RX MEDLINE; 96032017.
RA ELLIS J., CARLIN A., STEFFES C., WU J., LIU J., ROSEN B.P.;
RL MICROBIOLOGY 141:1927-1935(1995).
TE GENE FUSION, BETA-LACTAMASE, BETA-GALACTOSIDASE;
NS 12 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 21 41
FT TRANSMEM 55 75
FT TRANSMEM 104 124
FT TRANSMEM 130 148
FT TRANSMEM 160 180
FT TRANSMEM 199 217
FT TRANSMEM 244 263
FT TRANSMEM 283 303
FT TRANSMEM 347 364
FT TRANSMEM 371 391
FT TRANSMEM 415 432
FT TRANSMEM 449 469
SQ SEQUENCE 488 AA; 53471 MW; B0E7230B CRC32;
VSETKTTEAP GLRRELKARH LTMIAIGGSI GTGLFVASGA TISQAGPGGA LLSYMLIGLM
VYFLMTSLGE LAAYMPVSGS FATYGQNYVE EGFGFALGWN YWYNWAVTIA VDLVAAQLVM
NWWFPDTPGW IWSALFLGVI FLLNYISVRG FGEAEYWFSL IKVTTVIVFI IVGVLMIIGI
FKGAQPAGWS NWTIGEAPFA GGFAAMIGVA MIVGFSFQGT ELIGIAAGES EDPAKNIPRA
VRQVFWRILL FYVFAILIIS LIIPYTDPSL LRNDVKDISV SPFTLVFQHA GLLSAAAVMN
AVILTAVLSA GNSGMYASTR MLYTLACDGK APRIFAKLSR GGVPRNALYA TTVIAGLCFL
TSMFGNQTVY LWLLNTSGMT GFIAWLGIAI SHYRFRRGYV LQGHDINDLP YRSGFFPLGP
IFAFILCLII TLGQNYEAFL KDTIDWGGVA ATYIGIPLFL IIWFGYKLIK GTHFVRYSEM
KFPQNDKK
//
ID GPI_PHAGE
OR BACTERIOPHAGE F1
ME INSERT INTO ESHERICHIA COLI INNER MEMBRANE;
NO 24;
AC J02451 GENBANK;
DE GENE I PROTEIN;
DT 12-SEP-1997
RX PMID: 2457024, MUID: 88298819.
RA HORABIN, J.I., WEBSTER, R.E.;
RL J. BIOL. CHEM. 263:11575-11583(1988).
TE GENE FUSION, ECORI ENDONUCLEASE, ALKALINE PHOSPHATASE;
NS 1 SEGMENT;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 254 273
SQ SEQUENCE 348 AA;
MAVYFVTGKL GSGKTLVSVG KIQDKIVAGC KIATNLDLRL QNLPQVGRFA KTPRVLRIPD
KPSISDLLAI GRGNDSYDEN KNGLLVLDEC GTWFNTRSWN DKERQPIIDW FLHARKLGWD
IIFLVQDLSI VDKQARSALA EHVVYCRRLD RITLPFVGTL YSLVTGSKMP LPKLHVGVVK
YGDSQLSPTV ERWLYTGKNL YNAYDTKQAF SSNYDSGVYS YLTPYLSHGR YFKPLNLGQK
MKLTKIYLKK FSRVLCLAIG FASAFTYSYI TQPKPEVKKV VSQTYDFDKF TIDSSQRLNL
SYRYVFKDSK GKLINSDDLQ KQGYSITYID LCTVSIKKGN SNEIVKCN
//
ID CYB_RHOSH
OR RHODOBACTER SPHAEROIDES (RHODOPSEUDOMONAS SPHAEROIDES).
ME PROKARYOTIC CELL MEMBRANE;
NO 25;
AC Q02761 SWISSPROT;
DE CYTOCHROME B SUBUNIT OF THE BC1 COMPLEX (UBIQUINOL-CYTOCHROME C
DE REDUCTASE COMPLEX)
DT 12-SEP-1997
RX PMID: 1645718, MUID: 91250399.
RA YUN, C.H., VAN DOREN, S.R., CROFTS, A.R., GENNIS, R.B.;
RL J. BIOL. CHEM. 266:10967-10973(1991).
TE GENE FUSION, ALKALINE PHOSPHATASE;
NS 8 SEGMENTS;
SS ALPHA;
TP N-IN; C-OUT;
CC AN ADDITIONAL HELIX AT N-TERMINUS IS SUGGESTED FOR THE PROTEIN FROM
CC PARACOCCUS DNITRIFICANS IN EUR. J. BIOCHEM. 230:359-363(1995).
CC PMID: 7601123, MUID: 95324547.
FT TRANSMEM 49 66
FT TRANSMEM 94 112
FT TRANSMEM 129 148
FT TRANSMEM 193 215
FT TRANSMEM 252 269
FT TRANSMEM 329 345
FT TRANSMEM 364 381
FT TRANSMEM 388 407
SQ SEQUENCE 444 AA; 49918 MW; D3B91836 CRC32;
SGIPHDHYEP RTGIEKWLHS RLPIVALAYD TIMIPTPRNL NWMWIWGVVL AFCLVLQIVT
GIVLAMHYTP HVDLAFASVE HIMRNVNGGF MLRYLHANGA SLFFIAVYLH IFRGLYYGSY
KAPREVTWIV GMLIYLAMMA TAFMGYVLPW GQMSFWGATV ITGLFGAIPG IGHSIQTWLL
GGPAVDNATL NRFFSLHYLL PFVIAALVAI HIWAFHSTGN NNPTGVEVRR TSKAEAQKDT
VPFWPYFIIK DVFALAVVLL VFFAIVGFMP NYLGHPDNYI EANPLSTPAH IVPEWYFLPF
YAILRAFTAD VWVVQIANFI SFGIIDAKFF GVLAMFGAIL VMALVPWLDT SPVRSGRYRP
MFKIYFWLLA ADFVILTWVG AQQTTFPYDW ISLIASAYWF AYFLVILPIL GAIEKPVAPP
ATIEEDFNAH YSPATGGTKT VVAE
//
ID CPXA_ECOLI
OR ESCHERICHIA COLI.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNER MEMBRANE;
NO 26;
AC P08336;
DE SENSOR PROTEIN CPXA(EC 2.7.3.-).
DT 13-SEP-1997
RX PMID: 3058985, MUID: 89068697.
RA WEBER R.F., SILVERMAN P.M.;
RL J. BIOL. CHEM. 203:467-478(1988).
TE GENE FUSION, ALKALINE PHOSPHATASE;
NS 2 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 8 29
FT TRANSMEM 164 189
SQ SEQUENCE 457 AA; 51624 MW; EB72A150 CRC32;
MIGSLTARIF AIFWLTLALV LMLVLMLPKL DSRQMTELLD SEQRQGLMIE QHVEAELAND
PPNDLMWWRR LFRAIDKWAP PGQRLLLVTT EGRVIGAERS EMQIIRNFIG QADNADHPQK
KKYGRVELVG PFSVRDGEDN YQLYLIRPAS SSQSDFINLL FDRPLLLLIV TMLVSTPLLL
WLAWSLAKPA RKLKNAADEV AQGNLRQHPE LEAGPQEFLA AGASFNQMVT ALERMMTSQQ
RLLSDISHEL RTPLTRLQLG TALLRRRSGE SKELERIETE AQRLDSMIND LLVMSRNQQK
NALVSETIKA NQLWSEVLDN AAFEAEQMGK SLTVNFPPGP WPLYGNPNAL ESALENIVRN
ALRYSHTKIE VGFAVDKDGI TITVDDDGPG VSPEDREQIF RPFYRTDEAR DRESGGTGLG
LAIVETAIQQ HRGWVKAEDS PLGGLRLVIW LPLYKRS
//
ID TONB_SALTY
OR SALMONELLA TYPHIMURIUM.
ME CYTOPLASMIC MEMBRANE; INNER MEMBRANE;
NO 27;
AC P25945;
DE TONB PROTEIN.
DT 13-SEP-1997
RX PMID: 2266561, MUID: 91094049.
RA HANNAVY, K., BARR, G.C., DORMAN, C.J., ADAMSON, J., MAZENGERA, L.R.,
RA GALLAGHER, M.P., EVANS, J.S., LEVINE, B.A., TRAYER, I.P., HIGGINS, C.F.
RL J. Mol. Biol. 216:897-910(1990).
TE GENE FUSION, BETA-LACTAMASE; PROTEASE, PROTEINASE K;
NS 1 SEGMENT;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 1 32
SQ SEQUENCE 242 AA; 26293 MW; 45EBDDC5 CRC32;
MTLDLPRRFP WPTLLSVGIH GAVVAGLLYT SVHQVIELPA PAQPITVTMV SPADLEPPQA
VQPPPEPVVE PEPEPEPEPI PEPPKEAPVV IEKPKPKPKP KPKPKPVKKV EEQPKREVKP
AAPRPASPFE NSAPVRPTSS TASATSKPAV SVPTGPRALS RNQPQYPARA QALRIEGRVK
VKFDVTSAGR VENVQILSAQ PANMFEREVK NAMRKWRYEA GKPGSGLVVN IIFRLNGTAQ
IE
//
ID GLPT_ECOLI
OR ESCHERICHIA COLI.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNER MEMBRANE;
NO 28;
AC P08194;
DE GLYCEROL-3-PHOSPHATE TRANSPORTER (G-3-P TRANSPORTER) (G-3-P
DE PERMEASE).
DT 13-SEP-1997
RX PMID: 3141744, MUID: 89039254
RA GOETT, P., BOOS, W.;
RL MOL. MICROBIOL. 2:655-663(1988).
TE GENE FUSION, ALKALINE PHOSPHATASE, BETA-GALACTOSIDASE;
NS 12 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 28 44
FT TRANSMEM 65 87
FT TRANSMEM 98 113
FT TRANSMEM 120 136
FT TRANSMEM 170 184
FT TRANSMEM 191 209
FT TRANSMEM 256 270
FT TRANSMEM 293 310
FT TRANSMEM 324 348
FT TRANSMEM 356 378
FT TRANSMEM 385 410
FT TRANSMEM 419 438
SQ SEQUENCE 452 AA; 50310 MW; 82C978B6 CRC32;
MLSIFKPAPH KARLPAAEID PTYRRLRWQI FLGIFFGYAA YYLVRKNFAL AMPYLVEQGF
SRGDLGFALS GISIAYGFSK FIMGSVSDRS NPRVFLPAGL ILAAAVMLFM GFVPWATSSI
AVMFVLLFLC GWFQGMGWPP CGRTMVHWWS QKERGGIVSV WNCAHNVGGG IPPLLFLLGM
AWFNDWHAAL YMPAFCAILV ALFAFAMMRD TPQSCGLPPI EEYKNDYPDD YNEKAEQELT
AKQIFMQYVL PNKLLWYIAI ANVFVYLLRY GILDWSPTYL KEVKHFALDK SSWAYFLYEY
AGIPGTLLCG WMSDKVFRGN RGATGVFFMT LVTIATIVYW MNPAGNPTVD MICMIVIGFL
IYGPVMLIGL HALELAPKKA AGTAAGFTGL FGYLGGSVAA SAIVGYTVDF FGWDGGFMVM
IGGSILAVIL LIVVMIGEKR RHEQLLQERN GG
//
ID CAN1_YEAST
OR SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
ME ENDOPLASMIC RETICULUM;
NO 29;
AC P04817;
DE ARGININE PERMEASE.
DT 13-SEP-1997.
RX PMID: 3054424, MUID: 89039251.
RA AHMAD M., BUSSEY, H.;
RL MOL. MICROBIOL. 2:627-635(1988).
TE GENE FUSION, ACID PHOSPHATASE;
NS 10 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 120 140
FT TRANSMEM 166 186
FT TRANSMEM 230 254
FT TRANSMEM 261 280
FT TRANSMEM 286 306
FT TRANSMEM 324 343
FT TRANSMEM 420 437
FT TRANSMEM 451 469
FT TRANSMEM 494 518
FT TRANSMEM 525 548
SQ SEQUENCE 590 AA; 65785 MW; 74DCD8FC CRC32;
MTNSKEDADI EEKHMYNEPV TTLFHDVEAS QTHHRRGSIP LKDEKSKELY PLRSFPTRVN
GEDTFSMEDG IGDEDEGEVQ NAEVKRELKQ RHIGMIALGG TIGTGLFIGL STPLTNAGPV
GALISYLFMG SLAYSVTQSL GEMATFIPVT SSFTVFSQRF LSPAFGAANG YMYWFSWAIT
FALELSVVGQ VIQFWTYKVP LAAWISIFWV IITIMNLFPV KYYGEFEFWV ASIKVLAIIG
FLIYCFCMVC GAGVTGPVGF RYWRNPGAWG PGIISKDKNE GRFLGWVSSL INAAFTFQGT
ELVGITAGEA ANPRKSVPRA IKKVVFRILT FYIGSLLFIG LLVPYNDPKL TQSTSYVSTS
PFIIAIENSG TKVLPHIFNA VILTTIISAA NSNIYVGSRI LFGLSKNKLA PKFLSRTTKG
GVPYIAVFVT AAFGALAYME TSTGGDKVFE WLLNITGVAG FFAWLFISIS HIRFMQALKY
RGISRDELPF KAKLMPGLAY YAATFMTIII IIQGFTAFAP KFNGVSFAAA YISIFLFLAV
WILFQCIFRC RFIWKIGDVD IDSDRRDIEA IVWEDHEPKT FWDKFWNVVA
//
ID PBPB_ECOLI
OR ESCHERICHIA COLI.
ME CYTOPLASMIC MEMBRANE; PROKARYOTIC INNER MEMBRANE;
NO 30;
AC P02919; P75664 SWISSPROT;
DE PENICILLIN-BINDING PROTEIN 1B (PBP-1B).
DT 13-SEP-1997.
RX PMID: 3330753, MUID: 88260875.
RA EDELMAN, A., BOWLER, L., BROOME-SMITH, J.K., Spratt B.G.;
RL MOL. MICROBIOL. 1:101-106(1987).
TE GENE FUSION, BETA-LACTAMASE;
NS 1 SEGMENT;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 64 87
SQ SEQUENCE 844 AA; 94266 MW; 055EA120 CRC32;
MAGNDREPIG RKGKPTRPVK QKVSRRRYED DDDYDDYDDY EDEEPMPRKG KGKGKGRKPR
GKRGWLWLLL KLAIVFAVLI AIYGVYLDQK IRSRIDGKVW QLAAAVYGRM VNLEPDMTIS
KNEMVKLLEA TQYRQVSKMT RPGEFTVQAN SIEMIRRPFD FPDSKEGQVR ARLTFDGDHL
ATIVNMENNR QFGFFRLDPR LITMISSPNG EQRLFVPRSG FPDLLVDTLL ATEDRHFYEH
DGISLYSIGR AVLANLTAGR TVQGASTLTQ QLVKNLFLSS ERSYWRKANE AYMALIMDAR
YSKDRILELY MNEVYLGQSG DNEIRGFPLA SLYYFGRPVE ELSLDQQALL VGMVKGASIY
NPWRNPKLAL ERRNLVLRLL QQQQIIDQEL YDMLSARPLG VQPRGGVISP QPAFMQLVRQ
ELQAKLGDKV KDLSGVKIFT TFDSVAQDAA EKAAVEGIPA LKKQRKLSDL ETAIVVVDRF
SGEVRAMVGG SEPQFAGYNR AMQARRSIGS LAKPATYLTA LSQPKIYRLN TWIADAPIAL
RQPNGQVWSP QNDDRRYSES GRVMLVDALT RSMNVPTVNL GMALGLPAVT ETWIKLGVPK
DQLHPVPAML LGALNLTPIE VAQAFQTIAS GGNRAPLSAL RSVIAEDGKV LYQSFPQAER
AVPAQAAYLT LWTMQQVVQR GTGRQLGAKY PNLHLAGKTG TTNNNVDTWF AGIDGSTVTI
TWVGRDNNQP TKLYGASGAM SIYQRYLANQ TPTPLNLVPP EDIADMGVDY DGNFVCSGGM
RILPVWTSDP QSLCQQSEMQ QQPSGNPFDQ SSQPQQQPQQ QPAQQEQKDS DGVAGWIKDM
FGSN
//
ID OCCA_BOVIN
OR BOVINE.
ME MITOCHONDRIA INNER MEMBRANE;
NO 31;
AC OCC PDB;
DE BOVINE HEART CYTOCHROME C OXIDASE A SUBUNIT
DT 15-SEP-1997
RX PMID:8638158, MUID:96216288.
RA TSUKIHARA, T., AOYAMA, E., YAMASHITA, E., TOMIZAKI, T., YAMAGUCHI, K.,
RA SHINZAWA-ITOH, K., NAKASHIMA, R., YAONO, R., YOSHIKAWA, S.
RL SCIENCE, 272, 1136-1144(1996)
TE X-RAY DIFFRACTION;
NS 12 SEGMENTS;
SS ALPHA;
TP
FT TRANSMEM 12 41
FT TRANSMEM 51 86
FT TRANSMEM 95 117
FT TRANSMEM 141 170
FT TRANSMEM 183 212
FT TRANSMEM 228 260
FT TRANSMEM 270 286
FT TRANSMEM 299 327
FT TRANSMEM 336 357
FT TRANSMEM 371 400
FT TRANSMEM 407 433
FT TRANSMEM 447 478
SQ SEQUENCE 514 AA;
MFINRWLFST NHKDIGTLYL LFGAWAGMVG TALSLLIRAE LGQPGTLLGD DQIYNVVVTA
HAFVMIFFMV MPIMIGGFGN WLVPLMIGAP DMAFPRMNNM SFWLLPPSFL LLLASSMVEA
GAGTGWTVYP PLAGNLAHAG ASVDLTIFSL HLAGVSSILG AINFITTIIN MKPPAMSQYQ
TPLFVWSVMI TAVLLLLSLP VLAAGITMLL TDRNLNTTFF DPAGGGDPIL YQHLFWFFGH
PEVYILILPG FGMISHIVTY YSGKKEPFGY MGMVWAMMSI GFLGFIVWAH HMFTVGMDVD
TRAYFTSATM IIAIPTGVKV FSWLATLHGG NIKWSPAMMW ALGFIFLFTV GGLTGIVLAN
SSLDIVLHDT YYVVAHFHYV LSMGAVFAIM GGFVHWFPLF SGYTLNDTWA KIHFAIMFVG
VNMTFFPQHF LGLSGMPRRY SDYPDAYTMW NTISSMGSFI SLTAVMLMVF IIWEAFASKR
EVLTVDLTTT NLEWLNGCPP PYHTFEEPTY VNLK
//
ID OCCB_BOVIN
OR BOVINE.
ME MITOCHONDRIA INNER MEMBRANE;
NO 32;
AC OCC PDB;
DE BOVINE HEART CYTOCHROME C OXIDASE B SUBUNIT
DT 15-SEP-1997
RX PMID:8638158, MUID:96216288.
RA TSUKIHARA, T., AOYAMA, E., YAMASHITA, E., TOMIZAKI, T., YAMAGUCHI, K.,
RA SHINZAWA-ITOH, K., NAKASHIMA, R., YAONO, R., YOSHIKAWA, S.
RL SCIENCE, 272, 1136-1144(1996)
TE X-RAY DIFFRACTION;
NS 2 SEGMENTS;
SS ALPHA;
TP
FT TRANSMEM 15 45
FT TRANSMEM 60 87
SQ SEQUENCE 227 AA;
MAYPMQLGFQ DATSPIMEEL LHFHDHTLMI VFLISSLVLY IISLMLTTKL THTSTMDAQE
VETIWTILPA IILILIALPS LRILYMMDEI NNPSLTVKTM GHQWYWSYEY TDYEDLSFDS
YMIPTSELKP GELRLLEVDN RVVLPMEMTI RMLVSSEDVL HSWAVPSLGL KTDAIPGRLN
QTTLMSSRPG LYYGQCSEIC GSNHSFMPIV LELVPLKYFE KWSASML
//
ID OCCC_BOVIN
OR BOVINE.
ME MITOCHONDRIA INNER MEMBRANE;
NO 33;
AC OCC PDB;
DE BOVINE HEART CYTOCHROME C OXIDASE C SUBUNIT
DT 15-SEP-1997
RX PMID:8638158, MUID:96216288.
RA TSUKIHARA, T., AOYAMA, E., YAMASHITA, E., TOMIZAKI, T., YAMAGUCHI, K.,
RA SHINZAWA-ITOH, K., NAKASHIMA, R., YAONO, R., YOSHIKAWA, S.
RL SCIENCE, 272, 1136-1144(1996)
TE X-RAY DIFFRACTION;
NS 7 SEGMENTS;
SS ALPHA;
TP
FT TRANSMEM 16 34
FT TRANSMEM 41 66
FT TRANSMEM 73 105
FT TRANSMEM 129 152
FT TRANSMEM 156 183
FT TRANSMEM 191 223
FT TRANSMEM 233 256
SQ SEQUENCE 261 AA;
MTHQTHAYHM VNPSPWPLTG ALSALLMTSG LTMWFHFNSM TLLMIGLTTN MLTMYQWWRD
VIRESTFQGH HTPAVQKGLR YGMILFIISE VLFFTGFFWA FYHSSLAPTP ELGGCWPPTG
IHPLNPLEVP LLNTSVLLAS GVSITWAHHS LMEGDRKHML QALFITITLG VYFTLLQASE
YYEAPFTISD GVYGSTFFVA TGFHGLHVII GSTFLIVCFF RQLKFHFTSN HHFGFEAGAW
YWHFVDVVWL FLYVSIYWWG S
//
ID OCCD_BOVIN
OR BOVINE.
ME MITOCHONDRIA INNER MEMBRANE;
NO 34;
AC OCC PDB;
DE BOVINE HEART CYTOCHROME C OXIDASE A SUBUNIT
DT 15-SEP-1997
RX PMID:8638158, MUID:96216288.
RA TSUKIHARA, T., AOYAMA, E., YAMASHITA, E., TOMIZAKI, T., YAMAGUCHI, K.,
RA SHINZAWA-ITOH, K., NAKASHIMA, R., YAONO, R., YOSHIKAWA, S.
RL SCIENCE, 272, 1136-1144(1996)
TE X-RAY DIFFRACTION;
NS 1 SEGMENT;
SS ALPHA;
TP
FT TRANSMEM 77 103
SQ SEQUENCE 147 AA;
AHGSVVKSED YALPSYVDRR DYPLPDVAHV KNLSASQKAL KEKEKASWSS LSIDEKVELY
RLKFKESFAE MNRSTNEWKT VVGAAMFFIG FTALLLIWEK HYVYGPIPHT FEEEWVAKQT
KRMLDMKVAP IQGFSAKWDY DKNEWKK
//
ID OCCG_BOVIN
OR BOVINE.
ME MITOCHONDRIA INNER MEMBRANE;
NO 35;
AC OCC PDB;
DE BOVINE HEART CYTOCHROME C OXIDASE A SUBUNIT
DT 15-SEP-1997
RX PMID:8638158, MUID:96216288.
RA TSUKIHARA, T., AOYAMA, E., YAMASHITA, E., TOMIZAKI, T., YAMAGUCHI, K.,
RA SHINZAWA-ITOH, K., NAKASHIMA, R., YAONO, R., YOSHIKAWA, S.
RL SCIENCE, 272, 1136-1144(1996)
TE X-RAY DIFFRACTION;
NS 1 SEGMENT;
SS ALPHA;
FT TRANSMEM 13 37
SQ SQUENCE 84 AA;
ASAAKGDHGG TGARTWRFLT FGLALPSVAL CTLNSWLHSG HRERPAFIPY HHLRIRTKPF
SWGDGNHTFF HNPRVNPLPT GYEK
//
ID OCCI_BOVIN
OR BOVINE.
ME MITOCHONDRIA INNER MEMBRANE;
NO 36;
AC OCC PDB;
DE BOVINE HEART CYTOCHROME C OXIDASE A SUBUNIT
DT 15-SEP-1997
RX PMID:8638158, MUID:96216288.
RA TSUKIHARA, T., AOYAMA, E., YAMASHITA, E., TOMIZAKI, T., YAMAGUCHI, K.,
RA SHINZAWA-ITOH, K., NAKASHIMA, R., YAONO, R., YOSHIKAWA, S.
RL SCIENCE, 272, 1136-1144(1996)
TE X-RAY DIFFRACTION;
NS 1 SEGMENT;
SS ALPHA;
TP
FT TRANSMEM 12 52
SQ SEQUENCE 73 AA;
STALAKPQMR GLLARRLRFH IVGAFMVSLG FATFYKFAVA EKRKKAYADF YRNYDSMKDF
EEMRKAGIFQ SAK
//
ID OCCJ_BOVIN
OR BOVINE.
ME MITOCHONDRIA INNER MEMBRANE;
NO 37;
AC OCC PDB;
DE BOVINE HEART CYTOCHROME C OXIDASE A SUBUNIT
DT 15-SEP-1997
RX PMID:8638158, MUID:96216288.
RA TSUKIHARA, T., AOYAMA, E., YAMASHITA, E., TOMIZAKI, T., YAMAGUCHI, K.,
RA SHINZAWA-ITOH, K., NAKASHIMA, R., YAONO, R., YOSHIKAWA, S.
RL SCIENCE, 272, 1136-1144(1996)
TE X-RAY DIFFRACTION;
NS 1 SEGMENT;
SS ALPHA;
TP
FT TRANSMEM 26 54
SQ SEQUENCE 56 AA;
FENRVAEKQK LFQEDNGLPV HLKGGATDNI LYRVTMTLCL GGTLYSLYCL GHASKK
//
ID OCCK_BOVIN
OR BOVINE.
ME MITOCHONDRIA INNER MEMBRANE;
NO 38;
AC OCC PDB;
DE BOVINE HEART CYTOCHROME C OXIDASE A SUBUNIT
DT 15-SEP-1997
RX PMID:8638158, MUID:96216288.
RA TSUKIHARA, T., AOYAMA, E., YAMASHITA, E., TOMIZAKI, T., YAMAGUCHI, K.,
RA SHINZAWA-ITOH, K., NAKASHIMA, R., YAONO, R., YOSHIKAWA, S.
RL SCIENCE, 272, 1136-1144(1996)
TE X-RAY DIFFRACTION;
NS 1 SEGMENT;
SS ALPHA;
TP
FT TRANSMEM 9 35
SQ SEQUENCE 56 AA;
IHQKRAPDFH DKYGNAVLAS GATFCVAVWV YMATQIGIEW NPSPVGRVTP KEWREQ
//
ID OCCL_BOVIN
OR BOVINE.
ME MITOCHONDRIA INNER MEMBRANE;
NO 39;
AC OCC PDB;
DE BOVINE HEART CYTOCHROME C OXIDASE A SUBUNIT
DT 15-SEP-1997
RX PMID:8638158, MUID:96216288.
RA TSUKIHARA, T., AOYAMA, E., YAMASHITA, E., TOMIZAKI, T., YAMAGUCHI, K.,
RA SHINZAWA-ITOH, K., NAKASHIMA, R., YAONO, R., YOSHIKAWA, S.
RL SCIENCE, 272, 1136-1144(1996)
TE X-RAY DIFFRACTION;
NS 1 SEGMENT;
SS ALPHA;
TP
FT TRANSMEM 18 44
SQ SEQUENCE 47 AA;
SHYEEGPGKN IPFSVENKWR LLAMMTLFFG SGFAAPFFIV RHQLLKK
//
ID OCCM_BOVIN
OR BOVINE.
ME MITOCHONDRIA INNER MEMBRANE;
NO 40;
AC OCC PDB;
DE BOVINE HEART CYTOCHROME C OXIDASE A SUBUNIT
DT 15-SEP-1997
RX PMID:8638158, MUID:96216288.
RA TSUKIHARA, T., AOYAMA, E., YAMASHITA, E., TOMIZAKI, T., YAMAGUCHI, K.,
RA SHINZAWA-ITOH, K., NAKASHIMA, R., YAONO, R., YOSHIKAWA, S.
RL SCIENCE, 272, 1136-1144(1996)
TE X-RAY DIFFRACTION;
NS 1 SEGMENT;
SS ALPHA;
TP
FT TRANSMEM 12 35
SQ SEQUENCE 46 AA;
ITAKPAKTPT SPKEQAIGLS VTFLSFLLPA GWVLYHLDNY KKSSAA
//
ID LHB5_RHOAC
OR RHODOPSEUDOMONAS ACIDOPHILA.
ME PROKARYOTIC CELL MEMBRANE;
NO 41;
AC 1KZU PDB; P26790 SWISSPROT;
DE LIGHT HARVESTING PROTEIN B-800/850 BETA CHAIN
DT 15-SEP-1997
RX
RA MCDERMOTT, G., PRINCE, S.M., FREER, A.A., HAWTHORNTHWAITE-LAWLESS, A.M.,
RA PAPIZ, M.Z., COGDELL, R.J., ISAACS, N.W.
RL NATURE, 374, 517-521(1995)
TE X-RAY DIFFRACTION;
NS 1 SEGMENT;
SS ALPHA;
TP
FT TRANSMEM 14 36
SQ SEQUENCE 41 AA;
ATLTAEQSEE LHKYVIDGTR VFLGLALVAH FLAFSATPWL H
//
ID LHA4_RHOAC
OR RHODOPSEUDOMONAS ACIDOPHILA.
ME PROKARYOTIC CELL MEMBRANE;
NO 42;
AC 1KZU PDB; P26789 SWISSPROT;
DE LIGHT HARVESTING PROTEIN B-800/850 ALPHA CHAIN
DT 15-SEP-1997
RX
RA MCDERMOTT, G., PRINCE, S.M., FREER, A.A., HAWTHORNTHWAITE-LAWLESS, A.M.,
RA PAPIZ, M.Z., COGDELL, R.J., ISAACS, N.W.
RL NATURE, 374, 517-521(1995)
TE X-RAY DIFFRACTION;
NS 1 SEGMENT;
SS ALPHA;
TP
FT TRANSMEM 15 35
SQ SEQUENCE 53 AA;
MNQGKIWTVV NPAIGIPALL GSVTVIAILV HLAILSHTTW FPAYWQGGVK KAA
//
ID NNTM_BOVIN.
AC P11024 SWISSPROT;
DT 18-SEP-1997
DE NAD(P) TRANSHYDROGENASE, MITOCHONDRIAL PRECURSOR (EC 1.6.1.1)
DE (PYRIDINE NUCLEOTIDE TRANSHYDROGENASE) (NICOTINAMIDE NUCLEOTIDE
DE TRANSHYDROGENASE).
DE TRANSIT SEQUENCE (1-43) REMOVED
OR BOS TAURUS (BOVINE).
ME MITOCHONDRIAL INNER MEMBRANE;
NO 43;
RX MEDLINE; 91170247.
RA YAMAGUCHI M., HATEFI Y.;
RL J. BIOL. CHEM. 266:5728-5735(1991).
TE IMMUNOCHEMICAL EXPERIMENTS, PROTEINASE, TRYPSIN, PAPAIN, PROTEINASE K,
TE MODIFICATION BY N-ETHYLMALEIMIDE;
SS ALPHA;
NS 14 SEGMENTS;
TP N-OUT; C-OUT;
FT TRANSMEM 432 450
FT TRANSMEM 458 478
FT TRANSMEM 484 503
FT TRANSMEM 515 535
FT TRANSMEM 553 573
FT TRANSMEM 579 599
FT TRANSMEM 603 623
FT TRANSMEM 629 648
FT TRANSMEM 659 679
FT TRANSMEM 697 717
FT TRANSMEM 735 754
FT TRANSMEM 758 776
FT TRANSMEM 790 810
FT TRANSMEM 814 836
SQ SEQUENCE 1043 AA;
CSAPVKP GIPYKQLTVG
VPKEIFQNEK RVALSPAGVQ ALVKQGFNVV VESGAGEASK FSDDHYRAAG AQIQGAKEVL
ASDLVVKVRA PMLNPTLGVH EADLLKTSGT LISFIYPAQN PDLLNKLSKR KTTVLAMDQV
PRVTIAQGYD ALSSMANIAG YKAVVLAANH FGRFFTGQIT AAGKVPPAKI LIVGGGVAGL
ASAGAAKSMG AIVRGFDTRA AALEQFKSLG AEPLEVDLKE SGEGQGGYAK EMSKEFIEAE
MKLFAQQCKE VDILISTALI PGKKAPILFN KEMIESMKEG SVVVDLAAEA GGNFETTKPG
ELYVHKGITH IGYTDLPSRM ATQASTLYSN NITKLLKAIS PDKDNFYFEV KDDFDFGTMG
HVIRGTVVMK DGQVIFPAPT PKNIPQGAPV KQKTVAELEA EKAATITPFR KTMTSASVYT
AGLTGILGLG IAAPNLAFSQ MVTTFGLAGI VGYHTVWGVT PALHSPLMSV TNAISGLTAV
GGLVLMGGHL YPSTTSQGLA ALATFISSVN IAGGFLVTQR MLDMFKRPTD PPEYNYLYLL
PAGTFVGGYL ASLYSGYNIE QIMYLGSGLC CVGFLAGLST QGTARLGNAL GMIGVAGGLA
ATLGGLKPCP ELLAQMSGAM ALGGTIGLTI AKRIQISDLP QLVAAFHSLV GLAAVLTCIA
EYIIEYPHFA TDAAANLTKI VAYLGTYIGG VTFSGSLVAY GKLQGILKSA PLLLPGRHLL
NAGLLAGSVG GIIPFMMDPS FTTGITCLGS VSALSAVMGE TLTARIGGAD MPVVITVLNS
YSGWALCAEG FLLNNNLLTI VGALIGSSGA ILSYIMCVAM NRSLANVILG GYGTTSTAGG
KPMEISGTHT EINLDNAIDM IREANSIIIT PGYGLCAAKA QYPIADLVKM LSEQGKKVRF
GIHPVAGRMP GQLNVLLAEA GVPYDIVLEM DEINHDFPDT DLVLVIGAND TVNSAAQEDP
NSIIAGMPVL EVWKSKQVIV MKRSLGVGYA AVDNPIFYKP NTAMLLGDAK KTCDALQAKV
RESYQK
//
ID CLC1_HUMAN.
AC P35523 SWISSPROT;
DT 19-SEP-1997;
DE CHLORIDE CHANNEL PROTEIN, SKELETAL MUSCLE (CHLORIDE CHANNEL PROTEIN
DE 1) (CLC-1).
OR HOMO SAPIENS (HUMAN).
ME EUKARYOTIC PLASMA MEMBRANE; SKELETAL MUSCLE;
NO 44;
RX PMID: 9207144, MUID: 97352851.
RA SCHMIDT-ROSE, T., JENTSCH, T.J.
TE GLYCOSYLATION SCANNING, PROTEASE, CYSTEIN MODIFYING;
NS 10 SEGMENTS;
SS ALPHA;
TP N-IN; C-IN;
FT TRANSMEM 118 137
FT TRANSMEM 159 182
FT TRANSMEM 206 227
FT TRANSMEM 266 290
FT TRANSMEM 305 323
FT TRANSMEM 348 368
FT TRANSMEM 391 414
FT TRANSMEM 461 491
FT TRANSMEM 524 545
FT TRANSMEM 553 572
SQ SEQUENCE 988 AA; 108739 MW; 944556D1 CRC32;
MEQSRSQQRG GEQSWWGSDP QYQYMPFEHC TSYGLPSENG GLQHRLRKDA GPRHNVHPTQ
IYGHHKEQFS DREQDIGMPK KTGSSSTVDS KDEDHYSKCQ DCIHRLGQVV RRKLGEDWIF
LVLLGLLMAL VSWSMDYVSA KSLQAYKWSY AQMQPSLPLQ FLVWVTFPLV LILFSALFCH
LISPQAVGSG IPEMKTILRG VVLKEYLTMK AFVAKVVALT AGLGSGIPVG KEGPFVHIAS
ICAAVLSKFM SVFCGVYEQP YYYSDILTVG CAVGVGCCFG TPLGGVLFSI EVTSTYFAVR
NYWRGFFAAT FSAFVFRVLA VWNKDAVTIT ALFRTNFRMD FPFDLKELPA FAAIGICCGL
LGAVFVYLHR QVMLGVRKHK ALSQFLAKHR LLYPGIVTFV IASFTFPPGM GQFMAGELMP
REAISTLFDN NTWVKHAGDP ESLGQSAVWI HPRVNVVIII FLFFVMKFWM SIVATTMPIP
CGGFMPVFVL GAAFGRLVGE IMAMLFPDGI LFDDIIYKIL PGGYAVIGAA ALTGAVSHTV
STAVICFELT GQIAHILPMM VAVILANMVA QSLQPSLYDS IIQVKKLPYL PDLGWNQLSK
YTIFVEDIMV RDVKFVSASY TYGELRTLLQ TTTVKTLPLV DSKDSMILLG SVERSELQAL
LQRHLCPERR LRAAQEMARK LSELPYDGKA RLAGEGPPGA PPGRPESFAF VDEDEDEDLS
GKSELPPSLA LHPSTTAPLS PEEPNGPLPG HKQQPEAPEP AGQRPSIFQS LLHCLLGRAR
PTKKKTTQDS TDLVDNMSPE EIEAWEQEQL SQPVCFDSCC IDQSPFQLVE QTTLHKTHTL
FSLLGLHLAY VTSMGKLRGV LALEELQKAI EGHTKSGVQL RPPLASFRNT TSTRKSTGAP
PSSAENWNLP EDRPGATGTG DVIAASPETP VPSPSPEPPL SLAPGKVEGE LEELELVESP
GLEEELADIL QGPSLRSTDE EDEDELIL
//
ID CITN_KLEPN.
AC P31602 SWISSPROT;
DT 19-SEP-1997;
DE CITRATE-SODIUM SYMPORT (CITRATE TRANSPORTER) (CITRATE CARRIER
DE PROTEIN).
OR KLEBSIELLA PNEUMONIAE.
ME PROKARYOTE INNER MEMBRANE;
NO 45;
RX PMID: 8810332, MUID: 96411779.
RA VAN GEEST, M., LOLKEMA, J.S.;
RL J. BIOL. CHEM. 271:25582-25589(1996).
TE PROTEOLYSIS, PROTEINASE K; GENE FUSION, ALKALINE PHOSPHATASE;
NS 9 SEGMENTS;
SS ALPHA;
TP N-IN; C-OUT;
FT TRANSMEM 23 43
FT TRANSMEM 46 66
FT TRANSMEM 79 99
FT TRANSMEM 110 130
FT TRANSMEM 148 168
FT TRANSMEM 213 233
FT TRANSMEM 267 287
FT TRANSMEM 363 383
FT TRANSMEM 426 446
SQ SEQUENCE 446 AA; 47557 MW; 24C3D21A CRC32;
MTNMSQPPAT EKKGVSDLLG FKIFGMPLPL YAFALITLLL SHFYNALPTD IVGGFAIMFI
IGAIFGEIGK RLPIFNKYIG GAPVMIFLVA AYFVYAGIFT QKEIDAISNV MDKSNFLNLF
IAVLITGAIL SVNRRLLLKS LLGYIPTILM GIVGASIFGI AIGLVFGIPV DRIMMLYVLP
IMGGGNGAGA VPLSEIYHSV TGRSREEYYS TAIAILTIAN IFAIVFAAVL DIIGKKHTWL
SGEGELVRKA SFKVEEDEKT GQITHRETAV GLVLSTTCFL LAYVVAKKIL PSIGGVAIHY
FAWMVLIVAA LNASGLCSPE IKAGAKRLSD FFSKQLLWVL MVGVGVCYTD LQEIINAITF
ANVVIAAIIV IGAVLGAAIG GWLMGFFPIE SAITAGLCMA NRGGSGDLEV LSACNRMNLI
SYAQISSRLG GGIVLVIASI VFGMMI
//